Alright, I figured out how to play a cheated PAR-DoaE2 without ‘using’ Jnes.
1) Use Jnes, run DoaE2.
2) Input your codes.
3) Put items into the ‘item bank’
4) Save, shut down Jnes
5) Go into where Jnes is, go into the save directory, copy the DoaE2 Save File (Should be Your ROM Name.sav)
6) Copy it into your emulators choice (I use Nestopia) save folder.
7) Open your emulator, run the ROM, and voila.